4M1X | pdb_00004m1x

Tetrameric ring structure of 201phi2-1p060 from Pseudomonas phage 201phi2-1

PDB DOI: https://doi.org/10.2210/pdb4M1X/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Pseudomonas phage 201phi2-1
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2013-08-04 Released: 2014-08-06
Deposition Author(s): Partridge, J.R., Zehr, E.A., Agard, D.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free:
0.144 (Depositor), 0.150 (DCC)
R-Value Work:
0.119 (Depositor), 0.120 (DCC)
R-Value Observed:
0.120 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Tetrameric ring structure of 201phi2-1p060 from Pseudomonas phage 201phi2-1

Partridge, J.R., Zehr, E.A., Agard, D.A.

To be published.

Macromolecule Content

Total Structure Weight: 46.28 kDa
Atom Count: 3,032
Modeled Residue Count: 289
Deposited Residue Count: 396
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
uncharacterized protein 201phi2-1p060	A, B, C, D	99	Pseudomonas phage 201phi2-1	Mutation(s): 0
UniProt
Find proteins for B3FK35 (Pseudomonas phage 201phi2-1) Explore B3FK35 Go to UniProtKB: B3FK35
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B3FK35
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain E [auth D] MOL2 format, chain E [auth D] mmCIF format, chain E [auth D]	E [auth D]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain E [auth D] Interactions & Density Focus chain E [auth D]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.30 Å
R-Value Free: 0.144 (Depositor), 0.150 (DCC)
R-Value Work: 0.119 (Depositor), 0.120 (DCC)
R-Value Observed: 0.120 (Depositor)

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 88.098	α = 90
b = 52.672	β = 90
c = 62.302	γ = 90

Software Package:

Software Name	Purpose
Blu-Ice	data collection
SOLVE	phasing
PHENIX	refinement
HKL-2000	data reduction
SCALA	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2014-08-06

Deposition Author(s):

Partridge, J.R.

Revision History (Full details and data files)

Version 1.0: 2014-08-06
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references, Derived calculations

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.