4LV8

Murine IRGa6 bound to Toxoplasma ROP5C, a pseudokinase GDI


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.195 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Murine IRGa6 bound to Toxoplasma ROP5C, a pseudokinase GDI

Reese, M.L.Shah, N.Boothroyd, J.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Rhoptry protein 5 C
A
371Toxoplasma gondii type IMutation(s): 0 
Gene Names: ROP5C
Find proteins for I6ZQR7 (Toxoplasma gondii type I)
Go to UniProtKB:  I6ZQR7
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Interferon-inducible GTPase 1
B
423Mus musculusMutation(s): 0 
Gene Names: Iigp1 (Irga6)
EC: 3.6.5.-
Find proteins for Q9QZ85 (Mus musculus)
Go to UniProtKB:  Q9QZ85
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

Download SDF File 
Download CCD File 
B
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
ADP
Query on ADP

Download SDF File 
Download CCD File 
A
ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
 Ligand Interaction
EDO
Query on EDO

Download SDF File 
Download CCD File 
A, B
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.72 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.195 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 53.400α = 104.70
b = 53.700β = 95.30
c = 86.800γ = 111.00
Software Package:
Software NamePurpose
PHENIXrefinement
PHASERphasing
XSCALEdata scaling
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-09-25
    Type: Initial release
  • Version 1.1: 2013-10-02
    Type: Derived calculations
  • Version 1.2: 2017-11-15
    Type: Refinement description