4LUB | pdb_00004lub

X-ray structure of prephenate dehydratase from Streptococcus mutans

PDB DOI: https://doi.org/10.2210/pdb4LUB/pdb

Classification: LYASE
Organism(s): Streptococcus mutans UA159
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-07-25 Released: 2014-02-12
Deposition Author(s): Shin, H.H., Ku, H.K., Song, J.S., Choi, S., Son, S.Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free:
0.218 (Depositor), 0.220 (DCC)
R-Value Work:
0.190 (Depositor), 0.192 (DCC)
R-Value Observed:
0.192 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4LUB

This is version 1.1 of the entry. See complete history.

Literature

X-ray structure of prephenate dehydratase from Streptococcus mutans

Shin, H.H., Ku, H.K., Song, J.S., Choi, S., Son, S.Y.

To be published.

Macromolecule Content

Total Structure Weight: 62.36 kDa
Atom Count: 3,259
Modeled Residue Count: 378
Deposited Residue Count: 552
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative prephenate dehydratase	A, B	276	Streptococcus mutans UA159	Mutation(s): 0 Gene Names: pheA, SMU_786 EC: 4.2.1.51
UniProt
Find proteins for Q8DUV6 (Streptococcus mutans serotype c (strain ATCC 700610 / UA159)) Explore Q8DUV6 Go to UniProtKB: Q8DUV6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8DUV6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.218 (Depositor), 0.220 (DCC)
R-Value Work: 0.190 (Depositor), 0.192 (DCC)
R-Value Observed: 0.192 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 110.813	α = 90
b = 57.963	β = 125.9
c = 85.051	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SHELXS	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2014-02-12

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-02-12
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.