4LUB

X-ray structure of prephenate dehydratase from Streptococcus mutans

PDB DOI: https://doi.org/10.2210/pdb4LUB/pdb

Classification: LYASE
Organism(s): Streptococcus mutans UA159
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2013-07-25 Released: 2014-02-12
Deposition Author(s): Shin, H.H., Ku, H.K., Song, J.S., Choi, S., Son, S.Y.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.218
R-Value Work: 0.190
R-Value Observed: 0.192

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

X-ray structure of prephenate dehydratase from Streptococcus mutans

Shin, H.H., Ku, H.K., Song, J.S., Choi, S., Son, S.Y.

To be published.

Macromolecule Content

Total Structure Weight: 62.36 kDa
Atom Count: 3,259
Modelled Residue Count: 378
Deposited Residue Count: 552
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative prephenate dehydratase	A, B	276	Streptococcus mutans UA159	Mutation(s): 0 Gene Names: pheA, SMU_786 EC: 4.2.1.51
UniProt
Find proteins for Q8DUV6 (Streptococcus mutans serotype c (strain ATCC 700610 / UA159)) Explore Q8DUV6 Go to UniProtKB: Q8DUV6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8DUV6
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.10 Å
R-Value Free: 0.218
R-Value Work: 0.190
R-Value Observed: 0.192
Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 110.813	α = 90
b = 57.963	β = 125.9
c = 85.051	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SHELXS	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2014-02-12

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-02-12
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.