4LR4

Crystal structure of a putative secreted protein (EUBREC_3654) from Eubacterium rectale at 2.43 A resolution


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.43 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.188 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Crystal structure of a hypothetical protein (EUBREC_3654) from Eubacterium rectale at 2.43 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
hypothetical proteinA, B, C, D370[Eubacterium] rectale ATCC 33656Mutation(s): 0 
Gene Names: EUBREC_3654RER070207000171
Find proteins for C4ZEB7 (Agathobacter rectalis (strain ATCC 33656 / DSM 3377 / JCM 17463 / KCTC 5835 / VPI 0990))
Explore C4ZEB7 
Go to UniProtKB:  C4ZEB7
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download Ideal Coordinates CCD File 
AA [auth C] , HA [auth D] , I [auth A] , IA [auth D] , J [auth A] , JA [auth D] , K [auth A] , Q [auth B] , 
AA [auth C],  HA [auth D],  I [auth A],  IA [auth D],  J [auth A],  JA [auth D],  K [auth A],  Q [auth B],  Y [auth C],  Z [auth C]
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
GOL
Query on GOL

Download Ideal Coordinates CCD File 
E [auth A] , EA [auth D] , F [auth A] , FA [auth D] , G [auth A] , GA [auth D] , H [auth A] , M [auth B] , 
E [auth A],  EA [auth D],  F [auth A],  FA [auth D],  G [auth A],  GA [auth D],  H [auth A],  M [auth B],  N [auth B],  O [auth B],  P [auth B],  S [auth C],  T [auth C],  U [auth C],  V [auth C],  W [auth C],  X [auth C]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

Download Ideal Coordinates CCD File 
BA [auth C] , CA [auth C] , DA [auth C] , KA [auth D] , L [auth A] , LA [auth D] , MA [auth D] , NA [auth D] , 
BA [auth C],  CA [auth C],  DA [auth C],  KA [auth D],  L [auth A],  LA [auth D],  MA [auth D],  NA [auth D],  R [auth B]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B, C, DL-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 98.016α = 90
b = 106.733β = 92.45
c = 115.078γ = 90
Software Package:
Software NamePurpose
MolProbitymodel building
PDB_EXTRACTdata extraction
SHELXphasing
SHARPphasing
XSCALEdata scaling
BUSTER-TNTrefinement
XDSdata reduction
SHELXDphasing
BUSTERrefinement

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-09-18
    Type: Initial release
  • Version 1.1: 2014-12-24
    Changes: Structure summary
  • Version 1.2: 2017-11-15
    Changes: Refinement description
  • Version 1.3: 2018-01-24
    Changes: Database references