Crystal structure of the L,D-transpeptidase (residues 123-326) from Xylanimonas cellulosilytica DSM 15894
Nocek, B., Bigelow, L., Endres, M., Babnigg, G., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation 3D Report Full Report
Find similar proteins by: Sequence  |  Structure
Entity ID: 1 | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details |
ErfK/YbiS/YcfS/YnhG family protein | A | 207 | Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07) | Mutation(s): 0  |
Find proteins for D1BWR1 (Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)) Go to UniProtKB:  D1BWR1 |
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CL Query on CL | A | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | ![]() |  Ligand Interaction |
Modified Residues  1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | ![]() | MET |
Length (Å) | Angle (°) |
---|---|
a = 62.849 | α = 90.00 |
b = 62.849 | β = 90.00 |
c = 167.210 | γ = 90.00 |
Software Name | Purpose |
---|---|
ARP/wARP | model building |
CCP4 | phasing |
HKL-3000 | phasing |
CCP$ | model building |
SBC-Collect | data collection |
REFMAC | refinement |
DM | model building |
HKL-3000 | data scaling |
HKL-3000 | data reduction |
MLPHARE | phasing |
DM | phasing |