4LPQ

Crystal structure of the L,D-transpeptidase (residues 123-326) from Xylanimonas cellulosilytica DSM 15894


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Free: 0.146 
  • R-Value Work: 0.122 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

Crystal structure of the L,D-transpeptidase (residues 123-326) from Xylanimonas cellulosilytica DSM 15894

Nocek, B.Bigelow, L.Endres, M.Babnigg, G.Joachimiak, A.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
ErfK/YbiS/YcfS/YnhG family protein
A
207Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07)
Find proteins for D1BWR1 (Xylanimonas cellulosilytica (strain DSM 15894 / CECT 5975 / LMG 20990 / XIL07))
Go to UniProtKB:  D1BWR1
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.37 Å
  • R-Value Free: 0.146 
  • R-Value Work: 0.122 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 62.849α = 90.00
b = 62.849β = 90.00
c = 167.210γ = 90.00
Software Package:
Software NamePurpose
ARP/wARPmodel building
CCP4phasing
HKL-3000phasing
CCP$model building
SBC-Collectdata collection
REFMACrefinement
DMmodel building
HKL-3000data scaling
HKL-3000data reduction
MLPHAREphasing
DMphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-11-13
    Type: Initial release