Download MendeleyX-ray crystal structure of a putative UDP-4-amino-4-deoxy-l-arabinose--oxoglutarate aminotransferase from Burkholderia cenocepacia
Fairman, J.W., Lukacs, C.M., Edwards, T.E., Lorimer, D.To be published.
4LC3
X-ray crystal structure of a putative UDP-4-amino-4-deoxy-l-arabinose--oxoglutarate aminotransferase from Burkholderia cenocepacia
- PDB DOI: https://doi.org/10.2210/pdb4LC3/pdb
- Classification: TRANSFERASE
- Organism(s): Burkholderia cenocepacia J2315
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2013-06-21 Released: 2013-08-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.148
- R-Value Work: 0.111
- R-Value Observed: 0.113
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Putative UDP-4-amino-4-deoxy-l-arabinose--oxoglutarate aminotransferase | A, B | 391 | Burkholderia cenocepacia J2315 | Mutation(s): 0 Gene Names: arnB, BceJ2315_18950, BCAL1931 EC: 2.6.1.87 |  |
UniProt | |||||
Find proteins for B4EB17 (Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)) Explore B4EB17 Go to UniProtKB: B4EB17 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B4EB17 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CIT Query on CIT | C [auth A], I [auth B] | CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N |  | Ligand Interaction | |
| GOL Query on GOL | H [auth A], O [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | D [auth A], E [auth A], F [auth A], G [auth A], J [auth B], | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.148
- R-Value Work: 0.111
- R-Value Observed: 0.113
- Space Group: C 1 2 1
- Diffraction Data: https://doi.org/10.18430/M34LC3
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 190.93 | α = 90 |
| b = 58.91 | β = 97.39 |
| c = 83.08 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2013-08-21 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2013-08-21
Type: Initial release
