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Download EndnoteStructural basis of NSAID selectivity for the aldo-keto reductase 1C family
Yosaatmadja, Y., Flanagan, J.U., Squire, C.J.To be published.
4JQ1
AKR1C2 complex with naproxen
- DOI: 10.2210/pdb4JQ1/pdb
- Classification: Oxidoreductase/Oxidoreductase inhibitor
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2013-03-19 Released: 2014-04-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.6 Å
- R-Value Free: 0.236
- R-Value Work: 0.192
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | B | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | Ligand Interaction | |
| NAP Query on NAP | A, B | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N |  | Ligand Interaction | |
| TLA Query on TLA | A | L(+)-TARTARIC ACID C4 H6 O6 FEWJPZIEWOKRBE-JCYAYHJZSA-N |  | Ligand Interaction | |
| NPS Query on NPS | A, B | (2S)-2-(6-methoxynaphthalen-2-yl)propanoic acid NAPROXEN C14 H14 O3 CMWTZPSULFXXJA-VIFPVBQESA-N |  | Ligand Interaction | |
| EDO Query on EDO | A, B | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| External Ligand Annotations | |
|---|---|
| ID | Binding Affinity (Sequence Identity %) |
| NPS | IC50: 480 - >100000 nM (86) BINDINGDB |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.6 Å
- R-Value Free: 0.236
- R-Value Work: 0.192
- Space Group: H 3 2
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 142.519 | α = 90.00 |
| b = 142.519 | β = 90.00 |
| c = 205.773 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| REFMAC | refinement |
| Blu-Ice | data collection |
| XDS | data reduction |
| PHASER | phasing |
Entry History
Deposition Data
- Deposited Date: 2013-03-19
- Released Date: 2014-04-02
- Deposition Author(s): Yosaatmadja, Y., Flanagan, J.U., Squire, C.J.
