4J7B

Crystal structure of polo-like kinase 1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.208 

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This is version 1.2 of the entry. See complete history


Literature

Structural basis for the inhibition of Polo-like kinase 1

Xu, J.Shen, C.Wang, T.Quan, J.

(2013) Nat Struct Mol Biol 20: 1047-1053

  • DOI: https://doi.org/10.1038/nsmb.2623
  • Primary Citation of Related Structures:  
    4J7B

  • PubMed Abstract: 
  • Polo-like kinase 1 (PLK1) is a master regulator of mitosis and is considered a potential drug target for cancer therapy. PLK1 is characterized by an N-terminal kinase domain (KD) and a C-terminal Polo-box domain (PBD). The KD and PBD are mutually inhibited, but the molecular mechanisms of the autoinhibition remain unclear ...

    Polo-like kinase 1 (PLK1) is a master regulator of mitosis and is considered a potential drug target for cancer therapy. PLK1 is characterized by an N-terminal kinase domain (KD) and a C-terminal Polo-box domain (PBD). The KD and PBD are mutually inhibited, but the molecular mechanisms of the autoinhibition remain unclear. Here we report the 2.3-Å crystal structure of the complex of the Danio rerio KD and PBD together with a PBD-binding motif of Drosophila melanogaster microtubule-associated protein 205 (Map205(PBM)). The structure reveals that the PBD binds and rigidifies the hinge region of the KD in a distinct conformation from that of the phosphopeptide-bound PBD. This structure provides a framework for understanding the autoinhibitory mechanisms of PLK1 and also sheds light on the activation mechanisms of PLK1 by phosphorylation or phosphopeptide binding.


    Organizational Affiliation

    Laboratory of Chemical Genomics, School of Chemical Biology and Biotechnology, Peking University Shenzhen Graduate School, Shenzhen, China.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Polo-like kinaseA, D297Danio rerioMutation(s): 2 
Gene Names: plk1SO:0001217
EC: 2.7.11.21
UniProt
Find proteins for Q6DRK7 (Danio rerio)
Explore Q6DRK7 
Go to UniProtKB:  Q6DRK7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6DRK7
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Polo-like kinaseB, E237Danio rerioMutation(s): 1 
Gene Names: plk1SO:0001217
EC: 2.7.11.21
UniProt
Find proteins for Q6DRK7 (Danio rerio)
Explore Q6DRK7 
Go to UniProtKB:  Q6DRK7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ6DRK7
Protein Feature View
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
205 kDa microtubule-associated proteinC, F58Drosophila melanogasterMutation(s): 0 
Gene Names: Map205CG1483
UniProt
Find proteins for P23226 (Drosophila melanogaster)
Explore P23226 
Go to UniProtKB:  P23226
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP23226
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.264 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.208 
  • Space Group: P 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 47.681α = 89.15
b = 57.453β = 89.84
c = 125.736γ = 72.38
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
Blu-Icedata collection
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-07-24
    Type: Initial release
  • Version 1.1: 2013-09-18
    Changes: Database references
  • Version 1.2: 2016-06-08
    Changes: Derived calculations