X-ray structure of NifS-like protein from Rickettsia africae ESF-5
Seattle Structural Genomics Center for Infectious Disease (SSGCID), Abendroth, J., Sankaran, B., Fox III, D., Lorimer, D., Edwards, T.E.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
NifS-like protein | 380 | Rickettsia africae ESF-5 | Mutation(s): 0  Gene Names: spl1 | ![]() | |
UniProt | |||||
Find proteins for C3PNQ7 (Rickettsia africae (strain ESF-5)) Explore C3PNQ7  Go to UniProtKB:  C3PNQ7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | C3PNQ7 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | C [auth A], D [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CA Query on CA | E [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
LLP Query on LLP | A, B | L-PEPTIDE LINKING | C14 H22 N3 O7 P | LYS |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 57.02 | α = 90 |
b = 91.02 | β = 93.72 |
c = 72.62 | γ = 90 |
Software Name | Purpose |
---|---|
PHASER | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
BOS | data collection |
XDS | data reduction |
XSCALE | data scaling |