4IAJ | pdb_00004iaj

Crystal structure of a conserved domain protein (SP_1775) from Streptococcus pneumoniae TIGR4 at 1.91 A resolution

PDB DOI: https://doi.org/10.2210/pdb4IAJ/pdb

Classification: Structural Genomics, Unknown Function
Organism(s): Streptococcus pneumoniae TIGR4
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-12-06 Released: 2013-02-06
Deposition Author(s): Joint Center for Structural Genomics (JCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.91 Å
R-Value Free:
0.232 (Depositor), 0.240 (DCC)
R-Value Work:
0.180 (Depositor), 0.190 (DCC)
R-Value Observed:
0.182 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of a conserved domain protein (SP_1775) from Streptococcus pneumoniae TIGR4 at 1.91 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecule Content

Total Structure Weight: 74.35 kDa
Atom Count: 5,621
Modeled Residue Count: 596
Deposited Residue Count: 624
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Conserved domain protein	A, B, C, D, E A, B, C, D, E, F, G, H	78	Streptococcus pneumoniae TIGR4	Mutation(s): 0 Gene Names: NP_346208.1, SP_1775
UniProt
Find proteins for A0A0H2UR98 (Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)) Explore A0A0H2UR98 Go to UniProtKB: A0A0H2UR98
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0H2UR98
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain EA [auth G] SDF format, chain M [auth A] SDF format, chain P [auth B] SDF format, chain S [auth C] SDF format, chain W [auth D] SDF format, chain Z [auth E] SDF format, chain L [auth A] SDF format, chain GA [auth H] MOL2 format, chain EA [auth G] MOL2 format, chain M [auth A] MOL2 format, chain P [auth B] MOL2 format, chain S [auth C] MOL2 format, chain W [auth D] MOL2 format, chain Z [auth E] MOL2 format, chain L [auth A] MOL2 format, chain GA [auth H] mmCIF format, chain EA [auth G] mmCIF format, chain M [auth A] mmCIF format, chain P [auth B] mmCIF format, chain S [auth C] mmCIF format, chain W [auth D] mmCIF format, chain Z [auth E] mmCIF format, chain L [auth A] mmCIF format, chain GA [auth H]	EA [auth G] GA [auth H] L [auth A] M [auth A] P [auth B] EA [auth G], GA [auth H], L [auth A], M [auth A], P [auth B], S [auth C], W [auth D], Z [auth E]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain EA [auth G] Focus chain GA [auth H] Focus chain L [auth A] Focus chain M [auth A] Focus chain P [auth B] Focus chain S [auth C] Focus chain W [auth D] Focus chain Z [auth E] Interactions & Density Focus chain EA [auth G] Focus chain GA [auth H] Focus chain L [auth A] Focus chain M [auth A] Focus chain P [auth B] Focus chain S [auth C] Focus chain W [auth D] Focus chain Z [auth E]
MG Query on MG Download Ideal Coordinates CCD File SDF format, chain U [auth D] SDF format, chain V [auth D] SDF format, chain Y [auth E] MOL2 format, chain U [auth D] MOL2 format, chain V [auth D] MOL2 format, chain Y [auth E] mmCIF format, chain U [auth D] mmCIF format, chain V [auth D] mmCIF format, chain Y [auth E]	U [auth D], V [auth D], Y [auth E]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain U [auth D] Focus chain V [auth D] Focus chain Y [auth E] Interactions & Density Focus chain U [auth D] Focus chain V [auth D] Focus chain Y [auth E]
UNX Query on UNX Download Ideal Coordinates CCD File SDF format, chain CA [auth G] SDF format, chain DA [auth G] SDF format, chain J [auth A] SDF format, chain O [auth B] SDF format, chain K [auth A] MOL2 format, chain CA [auth G] MOL2 format, chain DA [auth G] MOL2 format, chain J [auth A] MOL2 format, chain O [auth B] MOL2 format, chain K [auth A] mmCIF format, chain CA [auth G] mmCIF format, chain DA [auth G] mmCIF format, chain J [auth A] mmCIF format, chain O [auth B] mmCIF format, chain K [auth A]	CA [auth G], DA [auth G], J [auth A], K [auth A], O [auth B]	UNKNOWN ATOM OR ION X		Interactions Focus chain CA [auth G] Focus chain DA [auth G] Focus chain J [auth A] Focus chain K [auth A] Focus chain O [auth B] Interactions & Density Focus chain CA [auth G] Focus chain DA [auth G] Focus chain J [auth A] Focus chain K [auth A] Focus chain O [auth B]
UNL Query on UNL Download Ideal Coordinates CCD File	AA [auth F] BA [auth G] FA [auth H] I [auth A] N [auth B] AA [auth F], BA [auth G], FA [auth H], I [auth A], N [auth B], Q [auth C], R [auth C], T [auth D], X [auth E]	Unknown ligand		Interactions Focus chain AA [auth F] Focus chain BA [auth G] Focus chain FA [auth H] Focus chain I [auth A] Focus chain N [auth B] Focus chain Q [auth C] Focus chain R [auth C] Focus chain T [auth D] Focus chain X [auth E] Interactions & Density Focus chain AA [auth F] Focus chain BA [auth G] Focus chain FA [auth H] Focus chain I [auth A] Focus chain N [auth B] Focus chain Q [auth C] Focus chain R [auth C] Focus chain T [auth D] Focus chain X [auth E]