Download MendeleyCrystal structure of jack bean urease inhibited with fluoride
Balasubramanian, A., Ponnuraj, K.To be published.
4GOA
Crystal structure of jack bean urease inhibited with fluoride
- PDB DOI: https://doi.org/10.2210/pdb4GOA/pdb
- Classification: HYDROLASE
- Organism(s): Canavalia ensiformis
- Mutation(s): No
- Deposited: 2012-08-19 Released: 2013-08-21
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.210
- R-Value Work: 0.161
- R-Value Observed: 0.163
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Urease | 840 | Canavalia ensiformis | Mutation(s): 0 EC: 3.5.1.5 |  | |
UniProt | |||||
Find proteins for P07374 (Canavalia ensiformis) Explore P07374 Go to UniProtKB: P07374 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P07374 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NI Query on NI | B [auth A], C [auth A] | NICKEL (II) ION Ni VEQPNABPJHWNSG-UHFFFAOYSA-N |  | ||
| F Query on F | D [auth A], E [auth A] | FLUORIDE ION F KRHYYFGTRYWZRS-UHFFFAOYSA-M |  | ||
| Modified Residues 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| CME Query on CME | A | L-PEPTIDE LINKING | C5 H11 N O3 S2 |  | CYS |
| KCX Query on KCX | A | L-PEPTIDE LINKING | C7 H14 N2 O4 |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.210
- R-Value Work: 0.161
- R-Value Observed: 0.163
- Space Group: P 63 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 139.49 | α = 90 |
| b = 139.49 | β = 90 |
| c = 198.081 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MOSFLM | data reduction |
| SCALA | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2013-08-21 Deposition Author(s): Balasubramania, A., Ponnuraj, K.
Revision History (Full details and data files)
- Version 1.0: 2013-08-21
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description - Version 1.2: 2023-12-06
Changes: Data collection
