4GBU

OYE1-W116A in complex with aromatic product of S-carvone dismutation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.18 Å
  • R-Value Free: 0.121 
  • R-Value Work: 0.100 
  • R-Value Observed: 0.102 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

X‑ray Crystallography Reveals How Subtle Changes Control the Orientation of Substrate Binding in an Alkene Reductase

Pompeu, Y.A.Sullivan, B.Stewart, J.D.

(2013) ACS Catal 3: 2376-2390


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
NADPH dehydrogenase 1A400Saccharomyces pastorianusMutation(s): 1 
Gene Names: OYE1
EC: 1.6.99.1
Find proteins for Q02899 (Saccharomyces pastorianus)
Explore Q02899 
Go to UniProtKB:  Q02899
Protein Feature View
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  • Reference Sequence
Small Molecules
Ligands 6 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
FMN
Query on FMN

Download Ideal Coordinates CCD File 
M [auth A]FLAVIN MONONUCLEOTIDE
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
 Ligand Interaction
1PE
Query on 1PE

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F [auth A], G [auth A], K [auth A], L [auth A], P [auth A]PENTAETHYLENE GLYCOL
C10 H22 O6
JLFNLZLINWHATN-UHFFFAOYSA-N
 Ligand Interaction
0WV
Query on 0WV

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C [auth A]2-methyl-5-(prop-1-en-2-yl)phenol
C10 H12 O
HHTWOMMSBMNRKP-UHFFFAOYSA-N
 Ligand Interaction
CL
Query on CL

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D [auth A], N [auth A]CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
MG
Query on MG

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B [auth A], H [auth A]MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
NA
Query on NA

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E [auth A], I [auth A], J [auth A], O [auth A], Q [auth A]SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.18 Å
  • R-Value Free: 0.121 
  • R-Value Work: 0.100 
  • R-Value Observed: 0.102 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 141.121α = 90
b = 141.121β = 90
c = 42.813γ = 90
Software Package:
Software NamePurpose
CBASSdata collection
PHASERphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-08-29
    Type: Initial release
  • Version 1.1: 2013-10-09
    Changes: Database references