Download MendeleyThe crystal structure of acyl carrier protein phosphodiesterase from Yersinia pestis CO92 in complex with FMN.
Tan, K., Gu, M., Kwon, K., Anderson, W.F., Joachimiak, A.To be published.
4ESE
The crystal structure of azoreductase from Yersinia pestis CO92 in complex with FMN.
- PDB DOI: 10.2210/pdb4ESE/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Yersinia pestis CO92
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2012-04-23 Released: 2012-05-23
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.200
- R-Value Work: 0.174
- R-Value Observed: 0.175
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| FMN-dependent NADH-azoreductase | A | 204 | Yersinia pestis CO92 | Mutation(s): 0 Gene Names: azoR, y2010, YPO2323, YP_2110 EC: 1.7 (PDB Primary Data), 1.6.5 (UniProt), 1.7.1.17 (UniProt) |  |
UniProt | |||||
Find proteins for Q8ZE60 (Yersinia pestis) Explore Q8ZE60 Go to UniProtKB: Q8ZE60 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q8ZE60 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 12P Query on 12P | E [auth A] | DODECAETHYLENE GLYCOL C24 H50 O13 WRZXKWFJEFFURH-UHFFFAOYSA-N |  | Ligand Interaction | |
| FMN Query on FMN | B [auth A], C [auth A], D [auth A] | FLAVIN MONONUCLEOTIDE C17 H21 N4 O9 P FVTCRASFADXXNN-SCRDCRAPSA-N |  | Ligand Interaction | |
| GOL Query on GOL | F [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| IMD Query on IMD | G [auth A] | IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.200
- R-Value Work: 0.174
- R-Value Observed: 0.175
- Space Group: C 2 2 21
- Diffraction Data DOI: 10.18430/M34ESE
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 51.825 | α = 90 |
| b = 120.388 | β = 90 |
| c = 60.074 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SBC-Collect | data collection |
| MOLREP | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2012-05-23 Deposition Author(s): Tan, K., Gu, M., Kwon, K., Anderson, W.F., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
Revision History (Full details and data files)
- Version 1.0: 2012-05-23
Type: Initial release
