4EGQ

Crystal structure of D-alanine-D-alanine ligase B from Burkholderia pseudomallei


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.212 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of D-alanine-D-alanine ligase B from Burkholderia pseudomallei

Edwards, T.E.Fairman, J.W.Abendroth, J.Seattle Structural Genomics Center for Infectious Disease (SSGCID)

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
D-alanine--D-alanine ligaseA, B, C, D316Burkholderia pseudomallei 1710bMutation(s): 0 
Gene Names: BURPS1710b_3542ddl
EC: 6.3.2.4
UniProt
Find proteins for Q3JNE1 (Burkholderia pseudomallei (strain 1710b))
Explore Q3JNE1 
Go to UniProtKB:  Q3JNE1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ3JNE1
Protein Feature View
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.250 
  • R-Value Work: 0.210 
  • R-Value Observed: 0.212 
  • Space Group: P 1
  • Diffraction Data DOI: 10.18430/M34EGQ
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 45.389α = 84.47
b = 66.092β = 80.5
c = 98.558γ = 83.59
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing
REFMACrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-04-11
    Type: Initial release
  • Version 1.1: 2017-11-15
    Changes: Refinement description