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Download EndnoteIdentification of Novel Peptide Deformylase Inhibitors from Natural Products
Cui, K., Zhu, L., Lu, W., Huang, J.To be published.
4E9A
Structure of Peptide Deformylase form Helicobacter Pylori in complex with inhibitor
- DOI: 10.2210/pdb4E9A/pdb
- Classification: HYDROLASE
- Organism(s): Helicobacter pylori
- Expression System: Escherichia coli
- Deposited: 2012-03-20 Released: 2013-04-24
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.662 Å
- R-Value Free: 0.230
- R-Value Work: 0.208
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EPE Query on EPE | A | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HEPES C8 H18 N2 O4 S JKMHFZQWWAIEOD-UHFFFAOYSA-N |  | Ligand Interaction | |
| QAP Query on QAP | A | 2-phenylethyl (2E)-3-(3,4-dihydroxyphenyl)prop-2-enoate C17 H16 O4 SWUARLUWKZWEBQ-VQHVLOKHSA-N |  | Ligand Interaction | |
| DMS Query on DMS | A | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | Ligand Interaction | |
| CO Query on CO | A | COBALT (II) ION Co XLJKHNWPARRRJB-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.662 Å
- R-Value Free: 0.230
- R-Value Work: 0.208
- Space Group: P 21 21 21
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 41.891 | α = 90.00 |
| b = 52.057 | β = 90.00 |
| c = 92.064 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data scaling |
| HKL-2000 | data collection |
| PHENIX | refinement |
| HKL-2000 | data reduction |
