4E21

The crystal structure of 6-phosphogluconate dehydrogenase from Geobacter metallireducens


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.198 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

The crystal structure of 6-phosphogluconate dehydrogenase from Geobacter metallireducens

Zhang, Z.Chamala, S.Evans, B.Foti, R.Gizzi, A.Hillerich, B.Kar, A.Lafleur, J.Seidel, R.Villigas, G.Zencheck, W.Almo, S.C.Swaminathan, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
6-phosphogluconate dehydrogenase (Decarboxylating)
A, B
358Geobacter metallireducens GS-15Mutation(s): 0 
Gene Names: Gmet_2620
EC: 1.1.1.44
UniProt
Find proteins for Q39SD5 (Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15))
Explore Q39SD5 
Go to UniProtKB:  Q39SD5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ39SD5
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.198 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 101.297α = 90
b = 184.832β = 90
c = 93.496γ = 90
Software Package:
Software NamePurpose
CBASSdata collection
SHELXSphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2012-03-21
    Type: Initial release
  • Version 1.1: 2024-10-16
    Changes: Data collection, Database references, Derived calculations, Structure summary