4E21

The crystal structure of 6-phosphogluconate dehydrogenase from Geobacter metallireducens


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.198 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The crystal structure of 6-phosphogluconate dehydrogenase from Geobacter metallireducens

Zhang, Z.Chamala, S.Evans, B.Foti, R.Gizzi, A.Hillerich, B.Kar, A.Lafleur, J.Seidel, R.Villigas, G.Zencheck, W.Almo, S.C.Swaminathan, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
6-phosphogluconate dehydrogenase (Decarboxylating)A, B358Geobacter metallireducens GS-15Mutation(s): 0 
Gene Names: Gmet_2620gnd
EC: 1.1.1.44
UniProt
Find proteins for Q39SD5 (Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15))
Explore Q39SD5 
Go to UniProtKB:  Q39SD5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ39SD5
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MRD
Query on MRD

Download Ideal Coordinates CCD File 
C [auth A],
D [auth B]
(4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.198 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 101.297α = 90
b = 184.832β = 90
c = 93.496γ = 90
Software Package:
Software NamePurpose
CBASSdata collection
SHELXSphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report




Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2012-03-21
    Type: Initial release