4E21

The crystal structure of 6-phosphogluconate dehydrogenase from Geobacter metallireducens


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.301 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.195 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The crystal structure of 6-phosphogluconate dehydrogenase from Geobacter metallireducens

Zhang, Z.Chamala, S.Evans, B.Foti, R.Gizzi, A.Hillerich, B.Kar, A.Lafleur, J.Seidel, R.Villigas, G.Zencheck, W.Almo, S.C.Swaminathan, S.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
6-phosphogluconate dehydrogenase (Decarboxylating)
A, B
358Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210)Mutation(s): 0 
Gene Names: gnd
Find proteins for Q39SD5 (Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210))
Go to UniProtKB:  Q39SD5
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MRD
Query on MRD

Download SDF File 
Download CCD File 
A, B
(4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
MSE
Query on MSE
A, B
L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.301 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.195 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 101.297α = 90.00
b = 184.832β = 90.00
c = 93.496γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
CBASSdata collection
HKL-2000data scaling
SHELXSphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Revision History 

  • Version 1.0: 2012-03-21
    Type: Initial release