Macromolecule Content

Total Structure Weight: 79.63 kDa
Atom Count: 5,372
Modelled Residue Count: 628
Deposited Residue Count: 674
Unique protein chains: 2

4DNC

Crystal structure of human MOF in complex with MSL1

PDB DOI: 10.2210/pdb4DNC/pdb

Classification: TRANSCRIPTION
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-02-08 Released: 2012-07-25
Deposition Author(s): Huang, J., Lei, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free: 0.246
R-Value Work: 0.208
R-Value Observed: 0.212

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural insight into the regulation of MOF in the male-specific lethal complex and the non-specific lethal complex.

Huang, J., Wan, B., Wu, L., Yang, Y., Dou, Y., Lei, M.

(2012) Cell Res 22: 1078-1081

PubMed: 22547026 Search on PubMedSearch on PubMed Central
DOI: 10.1038/cr.2012.72
Primary Citation of Related Structures:
4DNC

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone acetyltransferase KAT8	A, B	289	Homo sapiens	Mutation(s): 0 Gene Names: KAT8, MOF, MYST1, PP7073 EC: 2.3.1.48
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H7Z6 (Homo sapiens) Explore Q9H7Z6 Go to UniProtKB: Q9H7Z6
PHAROS: Q9H7Z6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9H7Z6
Protein Feature View Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Male-specific lethal 1 homolog	C [auth D], D [auth E]	48	Homo sapiens	Mutation(s): 0 Gene Names: MSL1, MSL1L1
UniProt & NIH Common Fund Data Resources
Find proteins for Q68DK7 (Homo sapiens) Explore Q68DK7 Go to UniProtKB: Q68DK7
PHAROS: Q68DK7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q68DK7
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth B] MOL2 format, chain E [auth A] MOL2 format, chain F [auth B]	E [auth A], F [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Ligand Interaction

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
ALY Query on ALY	A, B	L-PEPTIDE LINKING	C₈ H₁₆ N₂ O₃		LYS

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.05 Å
R-Value Free: 0.246
R-Value Work: 0.208
R-Value Observed: 0.212
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.801	α = 90
b = 111.518	β = 111.05
c = 66.751	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASER	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2012-07-25

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2012-07-25
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.