4DNC | pdb_00004dnc

Crystal structure of human MOF in complex with MSL1

• PDB DOI: https://doi.org/10.2210/pdb4DNC/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2012-02-08 Released: 2012-07-25 
• Deposition Author(s): Huang, J., Lei, M.

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free: 
  0.246 (Depositor), 0.244 (DCC) 
• R-Value Work: 
  0.208 (Depositor), 0.209 (DCC) 
• R-Value Observed: 
  0.212 (Depositor) 

Literature

Structural insight into the regulation of MOF in the male-specific lethal complex and the non-specific lethal complex.

Huang, J., Wan, B., Wu, L., Yang, Y., Dou, Y., Lei, M.

(2012) Cell Res 22: 1078-1081

• PubMed: 22547026 
• DOI: https://doi.org/10.1038/cr.2012.72
• Primary Citation Related Structures: 
  4DNC

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Hetero 4-mer - A2B2 

Biological assembly 3 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 79.63 kDa 
• Atom Count: 5,372 
• Modeled Residue Count: 628 
• Deposited Residue Count: 674 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone acetyltransferase KAT8	A, B	289	Homo sapiens	Mutation(s): 0  Gene Names: KAT8, MOF, MYST1, PP7073 EC: 2.3.1.48 (PDB Primary Data), 2.3.1 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H7Z6 (Homo sapiens) Explore Q9H7Z6  Go to UniProtKB:  Q9H7Z6
PHAROS:  Q9H7Z6 GTEx:  ENSG00000103510

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Male-specific lethal 1 homolog	C [auth D], D [auth E]	48	Homo sapiens	Mutation(s): 0  Gene Names: MSL1, MSL1L1
UniProt & NIH Common Fund Data Resources
Find proteins for Q68DK7 (Homo sapiens) Explore Q68DK7  Go to UniProtKB:  Q68DK7
PHAROS:  Q68DK7 GTEx:  ENSG00000188895

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	E [auth A], F [auth B]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
ALY	A, B	L-PEPTIDE LINKING	C8 H16 N2 O3		LYS

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free:  0.246 (Depositor), 0.244 (DCC) 
• R-Value Work:  0.208 (Depositor), 0.209 (DCC) 
• R-Value Observed: 0.212 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.801	α = 90
b = 111.518	β = 111.05
c = 66.751	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASER	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2012-07-25 
Deposition Author(s): Huang, J., Lei, M.

Revision History  

• Version 1.0: 2012-07-25
  Type: Initial release
  
• Version 1.1: 2024-10-16
  Changes: Data collection, Database references, Derived calculations, Structure summary