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Download EndnoteThe structure of Rubrerythrin from Burkholderia pseudomallei
Seattle Structural Genomics Center for Infectious Disease (SSGCID)To be published.
4DI0
The structure of Rubrerythrin from Burkholderia pseudomallei
- DOI: 10.2210/pdb4DI0/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Burkholderia pseudomallei (strain 1710b)
- Expression System: Escherichia coli
- Deposited: 2012-01-30 Released: 2012-02-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.9 Å
- R-Value Free: 0.200
- R-Value Work: 0.169
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Rubrerythrin | A, B | 144 | Burkholderia pseudomallei (strain 1710b) | Mutation(s): 0 |
Find proteins for Q3JK21 (Burkholderia pseudomallei (strain 1710b)) Go to UniProtKB: Q3JK21 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | B | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | A, B | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| FE Query on FE | A, B | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.9 Å
- R-Value Free: 0.200
- R-Value Work: 0.169
- Space Group: P 21 21 21
- Diffraction Data DOI:
10.18430/M34DI0 Protein Diffraction
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 50.580 | α = 90.00 |
| b = 56.470 | β = 90.00 |
| c = 99.070 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| PHASER | phasing |
| XSCALE | data scaling |
| XDS | data reduction |
| PDB_EXTRACT | data extraction |
| REFMAC | refinement |
Entry History
Deposition Data
- Deposited Date: 2012-01-30
- Released Date: 2012-02-08
- Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
