Download MendeleyThe structure of Rubrerythrin from Burkholderia pseudomallei
Seattle Structural Genomics Center for Infectious Disease (SSGCID)To be published.
4DI0
The structure of Rubrerythrin from Burkholderia pseudomallei
- PDB DOI: https://doi.org/10.2210/pdb4DI0/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Burkholderia pseudomallei 1710b
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2012-01-30 Released: 2012-02-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.200
- R-Value Work: 0.169
- R-Value Observed: 0.171
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Rubrerythrin | 144 | Burkholderia pseudomallei 1710b | Mutation(s): 0 Gene Names: BURPS1710b_A0924 |  | |
UniProt | |||||
Find proteins for Q3JK21 (Burkholderia pseudomallei (strain 1710b)) Explore Q3JK21 Go to UniProtKB: Q3JK21 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q3JK21 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | I [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
| EDO Query on EDO | D [auth A], E [auth A], F [auth A], J [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
| FE Query on FE | C [auth A], G [auth B], H [auth B] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.200
- R-Value Work: 0.169
- R-Value Observed: 0.171
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M34DI0
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 50.58 | α = 90 |
| b = 56.47 | β = 90 |
| c = 99.07 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2012-02-08 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2012-02-08
Type: Initial release - Version 1.1: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
