4DB5

Crystal structure of Rabbit GITRL


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.52 Å
  • R-Value Free: 0.176 
  • R-Value Work: 0.161 
  • R-Value Observed: 0.161 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of GITRL from Oryctolagus cuniculus

Kumar, P.R.Bhosle, R.Gizzi, A.Scott Glenn, A.Chowhury, S.Hillerich, B.Seidel, R.Nathenson, S.G.Almo, S.C.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Tumor necrosis factor ligand superfamily member 18A125Oryctolagus cuniculusMutation(s): 0 
Gene Names: GITRLTNFSF18
Find proteins for G1TIM1 (Oryctolagus cuniculus)
Explore G1TIM1 
Go to UniProtKB:  G1TIM1
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
B3P
Query on B3P

Download Ideal Coordinates CCD File 
B [auth A]2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
C11 H26 N2 O6
HHKZCCWKTZRCCL-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.52 Å
  • R-Value Free: 0.176 
  • R-Value Work: 0.161 
  • R-Value Observed: 0.161 
  • Space Group: F 2 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 127.047α = 90
b = 127.047β = 90
c = 127.047γ = 90
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
CBASSdata collection
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2012-03-21
    Type: Initial release
  • Version 1.1: 2012-06-06
    Changes: Structure summary