4BCT | pdb_00004bct

Crystal structure of kiwi-fruit allergen Act d 2

PDB DOI: https://doi.org/10.2210/pdb4BCT/pdb

Classification: ALLERGEN
Organism(s): Actinidia deliciosa
Mutation(s): No

Deposited: 2012-10-03 Released: 2013-10-16
Deposition Author(s): Pavkov-Keller, T., Bublin, M., Jankovic, M., Breiteneder, H., Keller, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 0.98 Å
R-Value Free:
0.131 (Depositor), 0.131 (DCC)
R-Value Work:
0.113 (Depositor), 0.113 (DCC)
R-Value Observed:
0.114 (Depositor)

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This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Kiwi-Fruit Allergen Act D 2

Pavkov-Keller, T., Bublin, M., Jankovic, M., Breiteneder, H., Keller, W.

To be published.

Macromolecule Content

Total Structure Weight: 21.87 kDa
Atom Count: 1,987
Modeled Residue Count: 201
Deposited Residue Count: 201
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
THAUMATIN-LIKE PROTEIN	A	201	Actinidia deliciosa	Mutation(s): 0
UniProt
Find proteins for P81370 (Actinidia deliciosa) Explore P81370 Go to UniProtKB: P81370
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P81370
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
EPE Query on EPE Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID C₈ H₁₈ N₂ O₄ S JKMHFZQWWAIEOD-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 0.98 Å
R-Value Free: 0.131 (Depositor), 0.131 (DCC)
R-Value Work: 0.113 (Depositor), 0.113 (DCC)
R-Value Observed: 0.114 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.541	α = 90
b = 48.312	β = 100.72
c = 50.58	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

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Entry History

Deposition Data

Released Date: 2013-10-16

Deposition Author(s):

Pavkov-Keller, T.

Breiteneder, H.

Revision History (Full details and data files)

Version 1.0: 2013-10-16
Type: Initial release
Version 1.1: 2024-10-16
Changes: Data collection, Database references, Derived calculations, Other, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.