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Crystal structure of kiwi-fruit allergen Act d 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 22-30% PEG 6000, PH 6.8-7.5
Crystal Properties Matthews coefficient Solvent content 1.98 38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.541 α = 90 b = 48.312 β = 100.72 c = 50.58 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.98 50 99 0.04 29.7 4 97776 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 0.98 50 91955 4842 99.85 0.11406 0.11315 0.1127 0.13125 0.1314 RANDOM 10.476
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.03 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.87 r_dihedral_angle_4_deg 17.346 r_dihedral_angle_3_deg 9.827 r_dihedral_angle_1_deg 6.805 r_scangle_it 6.546 r_scbond_it 4.628 r_mcangle_it 2.949 r_angle_refined_deg 2.394 r_rigid_bond_restr 2.276 r_mcbond_it 1.973
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.87 r_dihedral_angle_4_deg 17.346 r_dihedral_angle_3_deg 9.827 r_dihedral_angle_1_deg 6.805 r_scangle_it 6.546 r_scbond_it 4.628 r_mcangle_it 2.949 r_angle_refined_deg 2.394 r_rigid_bond_restr 2.276 r_mcbond_it 1.973 r_chiral_restr 0.133 r_bond_refined_d 0.025 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1512 Nucleic Acid Atoms Solvent Atoms 339 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling