4B2H

COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.167 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

The Flavoprotein Dodecin as a Redox Probe for Electron Transfer Through DNA.

Yu, Y.Heidel, B.Parapugna, T.L.Wenderhold-Reeb, S.Song, B.Schonherr, H.Grininger, M.Noll, G.

(2013) Angew.Chem.Int.Ed.Engl. 52: 4950


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
DODECIN
A
74Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1)Mutation(s): 1 
Find proteins for B0R5M0 (Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1))
Go to UniProtKB:  B0R5M0
Small Molecules
Ligands 5 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NA
Query on NA

Download SDF File 
Download CCD File 
A
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
 Ligand Interaction
SO4
Query on SO4

Download SDF File 
Download CCD File 
A
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
C3F
Query on C3F

Download SDF File 
Download CCD File 
A
3-[7,8-dimethyl-2,4-bis(oxidanylidene)benzo[g]pteridin-10-yl]propylcarbamic acid
C16 H17 N5 O4
SDVCPFDZIJESAH-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.178 
  • R-Value Work: 0.167 
  • Space Group: F 41 3 2
Unit Cell:
Length (Å)Angle (°)
a = 142.005α = 90.00
b = 142.005β = 90.00
c = 142.005γ = 90.00
Software Package:
Software NamePurpose
SCALAdata scaling
REFMACphasing
REFMACrefinement
XDSdata reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2013-05-29
    Type: Initial release