The Dingo Dataset: A Comprehensive Set of Data for the Sampl Challenge.Newman, J., Dolezal, O., Fazio, V., Caradoc-Davies, T., Peat, T.S.
(2012) J.Comput.Aided Mol.Des. 26: 497
- PubMed: 22187139
- DOI: 10.1007/s10822-011-9521-2
- Primary Citation of Related Structures:
- PubMed Abstract:
- Practical Aspects of the Sampl Challenge: Providing an Extensive Experimental Data Set for the Modeling Community.
Newman, J.,Fazio, V.J.,Caradoc-Davies, T.T.,Branson, K.,Peat, T.S.
(2009) J.Biomol.Screen 14: 1245
- Fragment Screening for the Modelling Community: Spr, Itc, and Crystallography
Dolezal, O.,Doughty, L.,Hattarki, M.K.,Fazio, V.J.,Caradoc-Davies, T.T.,Newman, J.,Peat, T.S.
(2013) Aust.J.Chem. 66: 1507
Part of the latest SAMPL challenge was to predict how a small fragment library of 500 commercially available compounds would bind to a protein target. In order to assess the modellers' work, a reasonably comprehensive set of data was collected using ...
Part of the latest SAMPL challenge was to predict how a small fragment library of 500 commercially available compounds would bind to a protein target. In order to assess the modellers' work, a reasonably comprehensive set of data was collected using a number of techniques. These included surface plasmon resonance, isothermal titration calorimetry, protein crystallization and protein crystallography. Using these techniques we could determine the kinetics of fragment binding, the energy of binding, how this affects the ability of the target to crystallize, and when the fragment did bind, the pose or orientation of binding. Both the final data set and all of the raw images have been made available to the community for scrutiny and further work. This overview sets out to give the parameters of the experiments done and what might be done differently for future studies.
CSIRO Division of Materials, Science and Engineering, 343 Royal Parade, Parkville, VIC 3052, Australia.