4ZXW

Crystal structure of SgcC5 protein from Streptomyces globisporus (complex with (R)-(-)-1-(2-naphthyl)-1,2-ethanediol and sucrose)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.187 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.161 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
C-domain type II peptide synthetase
A, B
462Streptomyces globisporusMutation(s): 0 
Find proteins for Q8GMG2 (Streptomyces globisporus)
Go to UniProtKB:  Q8GMG2
Small Molecules
Ligands 4 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
SUC
Query on SUC

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Download CCD File 
A, B
SUCROSE
C12 H22 O11
CZMRCDWAGMRECN-UGDNZRGBSA-N
 Ligand Interaction
SO4
Query on SO4

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Download CCD File 
A, B
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
 Ligand Interaction
CXS
Query on CXS

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Download CCD File 
B
3-CYCLOHEXYL-1-PROPYLSULFONIC ACID
C9 H19 N O3 S
PJWWRFATQTVXHA-UHFFFAOYSA-N
 Ligand Interaction
4T7
Query on 4T7

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Download CCD File 
A, B
(1R)-1-(naphthalen-2-yl)ethane-1,2-diol
C12 H12 O2
QFNOPZNUHSDHKZ-LBPRGKRZSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

Unit Cell:
Length (Å)Angle (°)
a = 99.397α = 90.00
b = 105.304β = 90.00
c = 108.167γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data reduction
HKL-3000data scaling
PHASERphasing
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM094585
National Institutes of Health/National Institute of General Medical SciencesUnited StatesGM098248

Revision History 

  • Version 1.0: 2015-06-17
    Type: Initial release
  • Version 1.1: 2016-09-21
    Type: Source and taxonomy
  • Version 1.2: 2017-09-06
    Type: Author supporting evidence, Derived calculations