4ZW0 | pdb_00004zw0

Crystal structure of beta-Hydroxyacyl-acyl carrier protein dehydratase (FabZ) from Candidatus asiaticum

PDB DOI: https://doi.org/10.2210/pdb4ZW0/pdb

Classification: LYASE
Organism(s): Candidatus Liberibacter asiaticus str. psy62
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2015-05-19 Released: 2015-12-16
Deposition Author(s): Wang, S., Gao, Z., Jiang, L., Dong, Y.H.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free:
0.284 (Depositor), 0.278 (DCC)
R-Value Work:
0.228 (Depositor), 0.225 (DCC)
R-Value Observed:
0.231 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Beta-Hydroxyacyl-acyl Carrier Protein Dehydratase (FabZ) from Candidatus Liberibacter Asiaticum: Protein Characterization and Structural Modeling

Wang, S., Gao, Z., LI, Y., Jiang, L., Dong, Y.H.

(2015) Austin J Microbiol 1

Macromolecule Content

Total Structure Weight: 55.06 kDa
Atom Count: 3,426
Modeled Residue Count: 428
Deposited Residue Count: 483
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ	A, B, C	161	Candidatus Liberibacter asiaticus str. psy62	Mutation(s): 0 Gene Names: fabZ, CLIBASIA_03305 EC: 4.2.1.59
UniProt
Find proteins for C6XFU0 (Liberibacter asiaticus (strain psy62)) Explore C6XFU0 Go to UniProtKB: C6XFU0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	C6XFU0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.284 (Depositor), 0.278 (DCC)
R-Value Work: 0.228 (Depositor), 0.225 (DCC)
R-Value Observed: 0.231 (Depositor)

Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 75.346	α = 90
b = 75.346	β = 90
c = 353.236	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2015-12-16

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2015-12-16
Type: Initial release
Version 1.1: 2016-11-09
Changes: Database references
Version 1.2: 2024-03-20
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.