4ZOM

RORgamma in complex with inverse agonist 4j.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.200 

wwPDB Validation 3D Report Full Report


This is version 1.2 of the entry. See complete history

Literature

Discovery of novel pyrazole-containing benzamides as potent ROR gamma inverse agonists.

Wang, T.Banerjee, D.Bohnert, T.Chao, J.Enyedy, I.Fontenot, J.Guertin, K.Jones, H.Lin, E.Y.Marcotte, D.Talreja, T.Van Vloten, K.

(2015) Bioorg.Med.Chem.Lett. 25: 2985-2990

  • DOI: 10.1016/j.bmcl.2015.05.028

  • PubMed Abstract: 
  • The nuclear receptor RORγ plays a central role in controlling a pro-inflammatory gene expression program in several lymphocyte lineages including TH17 cells. RORγ-dependent inflammation has been implicated in the pathogenesis of several major autoimm ...

    The nuclear receptor RORγ plays a central role in controlling a pro-inflammatory gene expression program in several lymphocyte lineages including TH17 cells. RORγ-dependent inflammation has been implicated in the pathogenesis of several major autoimmune diseases and thus RORγ is an attractive target for therapeutic intervention in these diseases. Starting from a lead biaryl compound 4a, replacement of the head phenyl moiety with a substituted aminopyrazole group resulted in a series with improved physical properties. Further SAR exploration led to analogues (e.g., 4j and 5m) as potent RORγ inverse agonists.


    Organizational Affiliation

    Chemistry and Molecular Therapeutics, Biogen, 12 Cambridge Center, Cambridge, MA 02142, USA. Electronic address: taowang2@gmail.com.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Nuclear receptor ROR-gamma
A, B, C, D
225Homo sapiensMutation(s): 0 
Gene Names: RORC (NR1F3, RORG, RZRG)
Find proteins for P51449 (Homo sapiens)
Go to Gene View: RORC
Go to UniProtKB:  P51449
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
4Q3
Query on 4Q3

Download SDF File 
Download CCD File 
A, B, C, D
N-{4-[3-(acetylamino)-1-(propan-2-yl)-1H-pyrazol-5-yl]-2-[(1R,5S)-3-azabicyclo[3.1.0]hex-3-yl]phenyl}-2-chloro-6-fluoro-N-methylbenzamide
C27 H29 Cl F N5 O2
JGJWPIOGJPAGQE-KDURUIRLSA-N
 Ligand Interaction
External Ligand Annotations 
IDBinding Affinity (Sequence Identity %)
4Q3IC50: 4.9 nM (100) BINDINGDB
4Q3EC50: 10 - 110 nM (100) BINDINGDB
4Q3IC50: 3 nM BINDINGMOAD
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.27 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.200 
  • Space Group: P 31
Unit Cell:
Length (Å)Angle (°)
a = 99.422α = 90.00
b = 99.422β = 90.00
c = 129.439γ = 120.00
Software Package:
Software NamePurpose
PDB_EXTRACTdata extraction
MOLREPphasing
HKL-2000data reduction
REFMACrefinement
SCALAdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

  • Deposited Date: 2015-05-06 
  • Released Date: 2015-06-17 
  • Deposition Author(s): Marcotte, D.J.

Revision History 

  • Version 1.0: 2015-06-17
    Type: Initial release
  • Version 1.1: 2015-06-24
    Type: Data collection
  • Version 1.2: 2017-11-01
    Type: Author supporting evidence, Database references, Derived calculations, Source and taxonomy