4ZMU | pdb_00004zmu

Dcsbis, a diguanylate cyclase from Pseudomonas aeruginosa

PDB DOI: https://doi.org/10.2210/pdb4ZMU/pdb

Classification: LYASE
Organism(s): Pseudomonas aeruginosa PAO1
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2015-05-04 Released: 2016-05-04
Deposition Author(s): Chen, Y., Liu, C., Liu, S., Chi, K., Gu, L.
Funding Organization(s): National Basic Research Program of China (973 Program)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.246 (Depositor), 0.255 (DCC)
R-Value Work:
0.188 (Depositor), 0.199 (DCC)
R-Value Observed:
0.190 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4ZMU

This is version 1.1 of the entry. See complete history.

Literature

crystal structure of Dcsbis from Pseudomonas aeruginosa

Chen, Y., Liu, C., Liu, S., Chi, K., Gu, L.

To be published.

Macromolecule Content

Total Structure Weight: 153.53 kDa
Atom Count: 10,770
Modeled Residue Count: 1,355
Deposited Residue Count: 1,380
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
diguanylate cyclase	A, B, C, D	345	Pseudomonas aeruginosa PAO1	Mutation(s): 0 Gene Names: PA2771
UniProt
Find proteins for Q9I072 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9I072 Go to UniProtKB: Q9I072
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9I072
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.246 (Depositor), 0.255 (DCC)
R-Value Work: 0.188 (Depositor), 0.199 (DCC)
R-Value Observed: 0.190 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 73.609	α = 90
b = 109.083	β = 95.88
c = 111.85	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
SCALEPACK	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2016-05-04

Deposition Author(s):

Funding Organization	Location	Grant Number
National Basic Research Program of China (973 Program)	China	2015CB150600

Revision History (Full details and data files)

Version 1.0: 2016-05-04
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.