4ZKF

Crystal structure of human phosphodiesterase 12


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.166 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of human phosphodiesterase

Kim, S.Y.Kohno, T.Mori, T.Kitano, K.Hakoshima, T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
2',5'-phosphodiesterase 12
A
462Homo sapiensMutation(s): 0 
Gene Names: PDE12
EC: 3.1.4.-
Find proteins for Q6L8Q7 (Homo sapiens)
Go to Gene View: PDE12
Go to UniProtKB:  Q6L8Q7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
MG
Query on MG

Download SDF File 
Download CCD File 
A
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.166 
  • Space Group: P 21 21 21
Unit Cell:
Length (Å)Angle (°)
a = 45.817α = 90.00
b = 99.840β = 90.00
c = 104.690γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data collection
PHASERphasing
PHASERdata reduction
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-06-17
    Type: Initial release
  • Version 1.1: 2015-06-24
    Type: Structure summary