4ZGO

Structure of C-terminally truncated Cdc123 from Schizosaccharomyces pombe


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.195 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Cdc123, a Cell Cycle Regulator Needed for eIF2 Assembly, Is an ATP-Grasp Protein with Unique Features.

Panvert, M.Dubiez, E.Arnold, L.Perez, J.Mechulam, Y.Seufert, W.Schmitt, E.

(2015) Structure 23: 1596-1608

  • DOI: https://doi.org/10.1016/j.str.2015.06.014
  • Primary Citation of Related Structures:  
    4ZGN, 4ZGO, 4ZGP, 4ZGQ

  • PubMed Abstract: 

    Eukaryotic initiation factor 2 (eIF2), a heterotrimeric guanosine triphosphatase, has a central role in protein biosynthesis by supplying methionylated initiator tRNA to the ribosomal translation initiation complex and by serving as a target for translational control in response to stress. Recent work identified a novel step indispensable for eIF2 function: assembly of eIF2 from its three subunits by the cell proliferation protein Cdc123. We report the first crystal structure of a Cdc123 representative, that from Schizosaccharomyces pombe, both isolated and bound to domain III of Saccharomyces cerevisiae eIF2γ. The structures show that Cdc123 resembles enzymes of the ATP-grasp family. Indeed, Cdc123 binds ATP-Mg(2+), and conserved residues contacting ATP-Mg(2+) are essential for Cdc123 to support eIF2 assembly and cell viability. A docking of eIF2αγ onto Cdc123, combined with genetic and biochemical experiments, allows us to propose a model explaining how Cdc123 participates in the biogenesis of eIF2 through facilitating assembly of eIF2γ to eIF2α.


  • Organizational Affiliation

    Laboratoire de Biochimie, Ecole Polytechnique, CNRS, UMR7654, 91128 Palaiseau Cedex, France.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cell division cycle protein 123
A, B
339Schizosaccharomyces pombeMutation(s): 0 
Gene Names: cdc123SPAP27G11.03
UniProt
Find proteins for Q9P7N5 (Schizosaccharomyces pombe (strain 972 / ATCC 24843))
Explore Q9P7N5 
Go to UniProtKB:  Q9P7N5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9P7N5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.06 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.195 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 85.6α = 90
b = 91.71β = 93.53
c = 86.24γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
CNRSFranceUMR7654
Ecole polytechniqueFranceUMR7654

Revision History  (Full details and data files)

  • Version 1.0: 2015-09-30
    Type: Initial release