Download MendeleyCrystal structure of a DJ-1 (PARK7) from Homo sapiens at 1.23 A resolution
Joint Center for Structural Genomics (JCSG), Partnership for Nuclear Receptor Signaling Code Biology (NHRs), Partnership for T-Cell Biology (TCELL)To be published.
4ZGG
Crystal structure of a DJ-1 (PARK7) from Homo sapiens at 1.23 A resolution
- PDB DOI: 10.2210/pdb4ZGG/pdb
- Classification: CHAPERONE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-04-22 Released: 2015-05-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.23 Å
- R-Value Free: 0.134
- R-Value Work: 0.116
- R-Value Observed: 0.117
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Protein deglycase DJ-1 | A | 190 | Homo sapiens | Mutation(s): 0 Gene Names: PARK7 EC: 3.1.2 (PDB Primary Data), 3.5.1 (PDB Primary Data), 3.5.1.124 (UniProt) |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q99497 (Homo sapiens) Explore Q99497 Go to UniProtKB: Q99497 | |||||
PHAROS: Q99497 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q99497 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se |  | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.23 Å
- R-Value Free: 0.134
- R-Value Work: 0.116
- R-Value Observed: 0.117
- Space Group: P 31 2 1
- Diffraction Data DOI: 10.18430/M38W24
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 75.002 | α = 90 |
| b = 75.002 | β = 90 |
| c = 74.897 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PDB_EXTRACT | data extraction |
| SOLVE | phasing |
| SCALA | data scaling |
| REFMAC | refinement |
| MOSFLM | data reduction |
Entry History
Deposition Data
- Released Date: 2015-05-20 Deposition Author(s): Joint Center for Structural Genomics (JCSG), Partnership for Nuclear Receptor Signaling Code Biology (NHRS), Partnership for T-Cell Biology (TCELL)
Revision History (Full details and data files)
- Version 1.0: 2015-05-20
Type: Initial release - Version 1.1: 2015-05-27
Changes: Database references, Structure summary - Version 1.2: 2017-11-22
Changes: Derived calculations, Refinement description, Source and taxonomy, Structure summary - Version 1.3: 2023-02-01
Changes: Data collection, Database references
