Download MendeleyStructure of Catalytic domain of Sst2 F403A mutant bound to ubiquitin at 1.7 Angstroms
Shrestha, R.K.To be published.
4ZFR
Catalytic domain of Sst2 F403A mutant bound to ubiquitin
- PDB DOI: https://doi.org/10.2210/pdb4ZFR/pdb
- Classification: HYDROLASE
- Organism(s): Schizosaccharomyces pombe 972h-, Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2015-04-21 Released: 2015-10-14
- Funding Organization(s): National Institutes of Health/National Center for Research Resources (NIH/NCRR)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.72 Å
- R-Value Free: 0.237
- R-Value Work: 0.201
- R-Value Observed: 0.203
wwPDB Validation 3D Report Full Report
This is version 1.3 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| AMSH-like protease sst2 | A | 197 | Schizosaccharomyces pombe 972h- | Mutation(s): 1 Gene Names: sst2, SPAC19B12.10 EC: 3.4.19 |  |
UniProt | |||||
Find proteins for Q9P371 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Explore Q9P371 Go to UniProtKB: Q9P371 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9P371 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ubiquitin | B | 81 | Homo sapiens | Mutation(s): 0 Gene Names: UBB |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P0CG47 (Homo sapiens) Explore P0CG47 Go to UniProtKB: P0CG47 | |||||
PHAROS: P0CG47 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P0CG47 | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | C [auth A], D [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | E [auth A], F [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.72 Å
- R-Value Free: 0.237
- R-Value Work: 0.201
- R-Value Observed: 0.203
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 42.139 | α = 90 |
| b = 58.174 | β = 109.3 |
| c = 56.442 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| HKL-3000 | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-10-14 Deposition Author(s): Shrestha, R.K.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Center for Research Resources (NIH/NCRR) | United States | 1R01RR026273 |
Revision History (Full details and data files)
- Version 1.0: 2015-10-14
Type: Initial release - Version 1.1: 2017-08-23
Changes: Data collection, Derived calculations - Version 1.2: 2017-09-20
Changes: Author supporting evidence - Version 1.3: 2019-12-04
Changes: Author supporting evidence
