Download Mendeley
Download EndnoteStructure of Catalytic domain of Sst2 F403A mutant bound to ubiquitin at 1.7 Angstroms
Shrestha, R.K.To be published.
4ZFR
Catalytic domain of Sst2 F403A mutant bound to ubiquitin
- DOI: 10.2210/pdb4ZFR/pdb
- Classification: HYDROLASE
- Organism(s): Schizosaccharomyces pombe (strain 972 / ATCC 24843), Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): 1
- Deposited: 2015-04-21 Released: 2015-10-14
- Funding Organization(s): National Institutes of Health/National Center for Research Resources
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.72 Å
- R-Value Free: 0.237
- R-Value Work: 0.201
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| AMSH-like protease sst2 | A | 197 | Schizosaccharomyces pombe (strain 972 / ATCC 24843) | Mutation(s): 1 Gene Names: sst2 EC: 3.4.19.- |
Find proteins for Q9P371 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)) Go to UniProtKB: Q9P371 | ||||
Entity ID: 2 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| ubiquitin | B | 81 | Homo sapiens | Mutation(s): 0 Gene Names: UBB |
Find proteins for P0CG47 (Homo sapiens) Go to Gene View: UBB Go to UniProtKB: P0CG47 | ||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | A | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | Ligand Interaction | |
| EDO Query on EDO | A, B | 1,2-ETHANEDIOL ETHYLENE GLYCOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.72 Å
- R-Value Free: 0.237
- R-Value Work: 0.201
- Space Group: P 1 21 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 42.139 | α = 90.00 |
| b = 58.174 | β = 109.30 |
| c = 56.442 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data reduction |
| REFMAC | refinement |
| HKL-3000 | phasing |
| HKL-3000 | data scaling |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2015-04-21
- Released Date: 2015-10-14
- Deposition Author(s): Shrestha, R.K.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Center for Research Resources | United States | 1R01RR026273 |
