4ZFH | pdb_00004zfh

Crystal structure of Artificial ankyrin repeat protein_Ank(GAG)1D4 mutant -Y56A

PDB DOI: https://doi.org/10.2210/pdb4ZFH/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-04-21 Released: 2016-04-20
Deposition Author(s): Chuankhayan, P., Saoin, S., Chupradit, K., Wisitponchai, T., Intachai, K., Kitidee, K., Nangola, S., Sanghiran, L.V., Hong, S.S., Boulanger, P., Tayapiwatana, C., Chen, C.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.89 Å
R-Value Free:
0.275 (Depositor), 0.277 (DCC)
R-Value Work:
0.210 (Depositor), 0.216 (DCC)
R-Value Observed:
0.213 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4ZFH

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of Artificial ankyrin repeat protein_Ank(GAG)1D4 mutant- Y56A

Chuankhayan, P., Saoin, S., Chupradit, K., Wisitponchai, T., Intachai, K., Kitidee, K., Nangola, S., Sanghiran, L.V., Hong, S.S., Boulanger, P., Tayapiwatana, C., Chen, C.J.

To be published.

Macromolecule Content

Total Structure Weight: 17.23 kDa
Atom Count: 1,300
Modeled Residue Count: 156
Deposited Residue Count: 159
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Artificial ankyrin repeat protein_Ank(GAG)1D4 mutant -Y56A	A	159	Homo sapiens	Mutation(s): 0

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
MG Query on MG Download:Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain D [auth A] SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain E [auth A] MOL2 format, chain D [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain E [auth A] mmCIF format, chain D [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A], C [auth A], D [auth A], E [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth A] Interactions & Density Focus chain B [auth A] Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.89 Å
R-Value Free: 0.275 (Depositor), 0.277 (DCC)
R-Value Work: 0.210 (Depositor), 0.216 (DCC)
R-Value Observed: 0.213 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 104.839	α = 90
b = 28.638	β = 106.39
c = 53.537	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
AMoRE	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2016-04-20

Deposition Author(s):

Chuankhayan, P.

Wisitponchai, T.

Sanghiran, L.V.

Tayapiwatana, C.

Revision History (Full details and data files)

Version 1.0: 2016-04-20
Type: Initial release
Version 1.1: 2024-03-20
Changes: Data collection, Database references, Derived calculations

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.