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Download EndnoteStructure of Gan1D, a 6-phospho-beta-galactosidase from Geobacillus stearothermophilus, in complex with 6-phospho-glucose
Lansky, S., Zehavi, A., Dvir, H., Shoham, Y., Shoham, G.To be published.
4ZEP
Structure of Gan1D, a 6-phospho-beta-galactosidase from Geobacillus stearothermophilus, in complex with 6-phospho-glucose
- DOI: 10.2210/pdb4ZEP/pdb
- Classification: HYDROLASE
- Organism(s): Geobacillus stearothermophilus
- Expression System: Escherichia coli
- Deposited: 2015-04-20 Released: 2016-06-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.21 Å
- R-Value Free: 0.207
- R-Value Work: 0.151
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by: Sequence | Structure
Entity ID: 1 | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details |
| Putative 6-phospho-beta-galactobiosidase | A, B | 485 | Geobacillus stearothermophilus | Mutation(s): 0 Gene Names: gan1D EC: 3.2.1.85 |
Find proteins for W8QF82 (Geobacillus stearothermophilus) Go to UniProtKB: W8QF82 | ||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | A, B | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| BG6 Query on BG6 | A, B | BETA-D-GLUCOSE-6-PHOSPHATE C6 H13 O9 P NBSCHQHZLSJFNQ-VFUOTHLCSA-N |  | Ligand Interaction | |
| IMD Query on IMD | A | IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.21 Å
- R-Value Free: 0.207
- R-Value Work: 0.151
- Space Group: C 1 2 1
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 107.158 | α = 90.00 |
| b = 68.944 | β = 100.39 |
| c = 152.896 | γ = 90.00 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | data scaling |
| REFMAC | refinement |
| PHASER | phasing |
| HKL-3000 | data reduction |
Entry History
Deposition Data
- Deposited Date: 2015-04-20
- Released Date: 2016-06-29
- Deposition Author(s): Lansky, S., Zehavi, A., Dvir, H., Shoham, Y., Shoham, G.
Revision History
- Version 1.0: 2016-06-29
Type: Initial release
