4ZCE

Crystal Structure of the dust mite allergen Der p 23 from Dermatophagoides pteronyssinus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.164 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

Serological, genomic and structural analyses of the major mite allergen Der p 23.

Mueller, G.A.Randall, T.A.Glesner, J.Pedersen, L.C.Perera, L.Edwards, L.L.DeRose, E.F.Chapman, M.D.London, R.E.Pomes, A.

(2016) Clin Exp Allergy 46: 365-376

  • DOI: 10.1111/cea.12680

  • PubMed Abstract: 
  • Der p 23 was recently identified in a European population as a major allergen and potentially a chitin binding protein.

    Der p 23 was recently identified in a European population as a major allergen and potentially a chitin binding protein.


    Organizational Affiliation

    Integrative Bioinformatics, National Institute of Environmental Health Sciences, National Institutes of Health, Research Triangle Park, NC, USA.,INDOOR Biotechnologies, Inc., Charlottesville, VA, USA.,Genome Integrity and Structural Biology Laboratory, Research Triangle Park, NC, USA.




Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Dust mite allergen
A, B
50Dermatophagoides pteronyssinusMutation(s): 0 
Find proteins for L7N6F8 (Dermatophagoides pteronyssinus)
Go to UniProtKB:  L7N6F8
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
EDO
Query on EDO

Download SDF File 
Download CCD File 
A
1,2-ETHANEDIOL
ETHYLENE GLYCOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.190 
  • R-Value Work: 0.164 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 25.283α = 90.00
b = 53.519β = 95.47
c = 40.395γ = 90.00
Software Package:
Software NamePurpose
HKL-3000data scaling
HKL-3000phasing
HKL-3000data reduction
PHENIXrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious DiseasesUnited StatesZ01-ES102885, ZIA-ES102645,R01AI077653

Revision History 

  • Version 1.0: 2015-11-25
    Type: Initial release
  • Version 1.1: 2015-12-09
    Type: Database references
  • Version 1.2: 2016-02-10
    Type: Database references
  • Version 1.3: 2017-09-20
    Type: Author supporting evidence, Derived calculations