4ZBG | pdb_00004zbg

Crystal Structure of a GNAT family Acetyltransferase from Brucella melitensis in complex with Acetyl-CoA

PDB DOI: https://doi.org/10.2210/pdb4ZBG/pdb

Classification: TRANSFERASE
Organism(s): Brucella abortus str. 2308 A
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2015-04-14 Released: 2015-04-29
Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.25 Å
R-Value Free:
0.163 (Depositor), 0.165 (DCC)
R-Value Work:
0.142 (Depositor), 0.143 (DCC)
R-Value Observed:
0.143 (Depositor)

Starting Model: experimental
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Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of a GNAT family Acetyltransferase from Brucella melitensis in complex with Acetyl-CoA

SSGCID, Dranow, D.M., Trakaki, T., Lorimer, D., Edwards, T.E.

To be published.

Macromolecule Content

Total Structure Weight: 19.53 kDa
Atom Count: 1,535
Modeled Residue Count: 154
Deposited Residue Count: 172
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acetyltransferase	A	172	Brucella abortus str. 2308 A	Mutation(s): 0 Gene Names: BAAA_2000484

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ACO Query on ACO Download:Ideal Coordinates CCD File SDF format, chain B [auth A] MOL2 format, chain B [auth A] mmCIF format, chain B [auth A]	B [auth A]	*ACETYL COENZYME A** C₂₃ H₃₈ N₇ O₁₇ P₃ S ZSLZBFCDCINBPY-ZSJPKINUSA-N		Interactions Focus chain B [auth A] Interactions & Density Focus chain B [auth A]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.25 Å
R-Value Free: 0.163 (Depositor), 0.165 (DCC)
R-Value Work: 0.142 (Depositor), 0.143 (DCC)
R-Value Observed: 0.143 (Depositor)

Diffraction Data:

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 29.81	α = 90
b = 57.11	β = 96.53
c = 44.06	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
XSCALE	data scaling
BALBES	phasing

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2015-04-29

Deposition Author(s):

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Revision History (Full details and data files)

Version 1.0: 2015-04-29
Type: Initial release
Version 1.1: 2017-10-11
Changes: Advisory, Data collection, Derived calculations, Source and taxonomy
Version 1.2: 2023-09-27
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.