4Z92

crystal structure of parechovirus-1 virion


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Work: 0.290 

wwPDB Validation 3D Report Full Report


This is version 1.3 of the entry. See complete history

Literature

The Structure of Human Parechovirus 1 Reveals an Association of the RNA Genome with the Capsid.

Kalynych, S.Palkova, L.Plevka, P.

(2015) J.Virol. 90: 1377-1386


Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
capsid subunit VP1
A
234Human parechovirus 1 (strain Harris)Mutation(s): 0 
Find proteins for Q66578 (Human parechovirus 1 (strain Harris))
Go to UniProtKB:  Q66578
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Capsid subunit VP3
B
253Human parechovirus 1 (strain Harris)Mutation(s): 0 
Find proteins for Q66578 (Human parechovirus 1 (strain Harris))
Go to UniProtKB:  Q66578
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
capsid subunit VP0
C
289Human parechovirus 1 (strain Harris)Mutation(s): 0 
Find proteins for Q66578 (Human parechovirus 1 (strain Harris))
Go to UniProtKB:  Q66578
Entity ID: 4
MoleculeChainsLengthOrganism
RNA (5'-R(*AP*UP*UP*UP*UP*U)-3')D6Echovirus 22 (strain Harris)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Work: 0.290 
  • Space Group: P 63 2 2
Unit Cell:
Length (Å)Angle (°)
a = 399.500α = 90.00
b = 399.500β = 90.00
c = 332.860γ = 120.00
Software Package:
Software NamePurpose
XDSdata reduction
SCALAdata scaling
CNSrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-11-18
    Type: Initial release
  • Version 1.1: 2015-12-02
    Type: Database references
  • Version 1.2: 2016-01-27
    Type: Database references
  • Version 1.3: 2019-02-20
    Type: Advisory, Data collection, Derived calculations