4Z6Y | pdb_00004z6y

Structure of the TBC1D7-TSC1 complex

PDB DOI: https://doi.org/10.2210/pdb4Z6Y/pdb

Classification: HYDROLASE INHIBITOR/PROTEIN BINDING
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2015-04-06 Released: 2016-04-20
Deposition Author(s): Gai, Z., Wu, G.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.81 Å
R-Value Free:
0.255 (Depositor), 0.253 (DCC)
R-Value Work:
0.206 (Depositor), 0.206 (DCC)
R-Value Observed:
0.209 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 4Z6Y

This is version 1.1 of the entry. See complete history.

Literature

Structure of the TBC1D7-TSC1 complex

Gai, Z., Wu, G.

To be published.

Macromolecule Content

Total Structure Weight: 152.03 kDa
Atom Count: 10,471
Modeled Residue Count: 1,304
Deposited Residue Count: 1,316
Unique protein chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TBC1 domain family member 7	A [auth B], C [auth G], E, G [auth A]	273	Homo sapiens	Mutation(s): 0 Gene Names: TBC1D7, TBC7, HSPC239
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P0N9 (Homo sapiens) Explore Q9P0N9 Go to UniProtKB: Q9P0N9
PHAROS: Q9P0N9 GTEx: ENSG00000145979
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9P0N9
Sequence Annotations Expand
Reference Sequence

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Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Hamartin	B [auth C], D [auth H], F, H [auth D]	56	Homo sapiens	Mutation(s): 0 Gene Names: TSC1, KIAA0243, TSC
UniProt & NIH Common Fund Data Resources
Find proteins for Q92574 (Homo sapiens) Explore Q92574 Go to UniProtKB: Q92574
PHAROS: Q92574 GTEx: ENSG00000165699
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q92574
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.81 Å
R-Value Free: 0.255 (Depositor), 0.253 (DCC)
R-Value Work: 0.206 (Depositor), 0.206 (DCC)
R-Value Observed: 0.209 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 56.991	α = 90
b = 145.689	β = 89.65
c = 114.758	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2016-04-20

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2016-04-20
Type: Initial release
Version 1.1: 2024-10-23
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.