4Z54

High Resolution Human Septin3 GTPase domain with alpha-zero helix in complex with GDP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.170 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

High Resolution Human Septin3 GTPase domain with alpha-zero helix in complex with GDP

Valadares, N.F.Macedo, J.N.Pereira, H.M.Brandao-Neto, J.Matos, S.O.Leonardo, D.A.Araujo, A.P.U.Garratt, R.C.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Neuronal-specific septin-3
A, B
287Homo sapiensMutation(s): 0 
Gene Names: SEPT3 (SEP3)
Find proteins for Q9UH03 (Homo sapiens)
Go to Gene View: SEPT3
Go to UniProtKB:  Q9UH03
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GDP
Query on GDP

Download SDF File 
Download CCD File 
A, B
GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
 Ligand Interaction
MG
Query on MG

Download SDF File 
Download CCD File 
A, B
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.199 
  • R-Value Work: 0.170 
  • Space Group: P 1
Unit Cell:
Length (Å)Angle (°)
a = 43.410α = 99.29
b = 44.550β = 100.77
c = 78.950γ = 108.39
Software Package:
Software NamePurpose
xia2data scaling
PHASERphasing
PHENIXrefinement
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-04-06
    Type: Initial release
  • Version 1.1: 2017-11-01
    Type: Author supporting evidence, Data collection, Derived calculations
  • Version 2.0: 2018-09-19
    Type: Advisory, Atomic model, Data collection, Database references, Derived calculations, Structure summary