4Z42

Crystal structure of urease from Yersinia enterocolitica


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.01 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.277 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of urease from Yersinia enterocolitica

Studer, G.Jakob, R.P.Mahi, M.A.Wiesand, U.Schwede, T.Maier, T.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Urease subunit gamma
A, D, G, J
100Yersinia enterocolitica W22703Mutation(s): 0 
Gene Names: ureA
EC: 3.5.1.5
Find proteins for F4MWM9 (Yersinia enterocolitica W22703)
Go to UniProtKB:  F4MWM9
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
Urease subunit beta
B, E, H, K
164Yersinia enterocolitica W22703Mutation(s): 0 
Gene Names: ureB
EC: 3.5.1.5
Find proteins for F4MWM8 (Yersinia enterocolitica W22703)
Go to UniProtKB:  F4MWM8
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
Urease subunit alpha
C, F, I, L
572Yersinia enterocolitica W22703Mutation(s): 0 
Gene Names: ureC
EC: 3.5.1.5
Find proteins for F4MWM7 (Yersinia enterocolitica W22703)
Go to UniProtKB:  F4MWM7
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
NI
Query on NI

Download SDF File 
Download CCD File 
C, F, I, L
NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.01 Å
  • R-Value Free: 0.298 
  • R-Value Work: 0.277 
  • Space Group: H 3 2
Unit Cell:
Length (Å)Angle (°)
a = 157.200α = 90.00
b = 157.200β = 90.00
c = 774.620γ = 120.00
Software Package:
Software NamePurpose
XDSdata reduction
SCALAdata scaling
BUSTERrefinement
PHASERphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-04-13
    Type: Initial release
  • Version 1.1: 2018-11-21
    Type: Advisory, Data collection, Derived calculations