4Z33

Crystal structure of the syntenin PDZ1 and PDZ2 tandem in complex with the Frizzled 7 C-terminal fragment and PIP2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.181 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of the syntenin PDZ1 and PDZ2 tandem in complex with the Frizzled 7 C-terminal fragment and PIP2

Egea-Jimenez, A.L.Gallardo, R.Garcia-Pino, A.Ivarsson, Y.Wawrzyniak, A.M.Kashyap, R.Loris, R.Schymkowitz, J.Rousseau, F.Zimmermann, P.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Syntenin-1
A, B
166Homo sapiensMutation(s): 0 
Gene Names: SDCBP (MDA9, SYCL)
Find proteins for O00560 (Homo sapiens)
Go to Gene View: SDCBP
Go to UniProtKB:  O00560
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
LYS-GLY-GLU-THR-ALA-VAL
C, D
6Homo sapiensMutation(s): 0 
Gene Names: FZD7
Find proteins for O75084 (Homo sapiens)
Go to Gene View: FZD7
Go to UniProtKB:  O75084
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
ACT
Query on ACT

Download SDF File 
Download CCD File 
A, B
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
IP2
Query on IP2

Download SDF File 
Download CCD File 
A
D-MYO-INOSITOL-4,5-BISPHOSPHATE
C6 H14 O12 P2
MCKAJXMRULSUKI-UZAAGFTCSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.239 
  • R-Value Work: 0.181 
  • Space Group: P 41 21 2
Unit Cell:
Length (Å)Angle (°)
a = 71.744α = 90.00
b = 71.744β = 90.00
c = 126.360γ = 90.00
Software Package:
Software NamePurpose
BUSTERrefinement
DENZOdata reduction
PHASERphasing
SCALEPACKdata scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2016-06-29
    Type: Initial release
  • Version 1.1: 2018-01-31
    Type: Database references