4Z1X

Crystal structure of LAGLIDADG homing endonuclease I-GzeII in complex with DNA target


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.173 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Crystal structure of LAGLIDADG homing endonuclease I-GzeII in complex with DNA target

Stoddard, B.L.Lambert, A.R.Kulshina, N.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure


Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
LAGLIDADG endonuclease
A, B
299Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084)Mutation(s): 7 
Gene Names: nad2
Find proteins for A5J036 (Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084))
Go to UniProtKB:  A5J036
Entity ID: 1
MoleculeChainsLengthOrganism
DNA (27-MER)C,E27synthetic construct
Entity ID: 2
MoleculeChainsLengthOrganism
DNA (27-MER)D,F27synthetic construct
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CA
Query on CA

Download SDF File 
Download CCD File 
A, B
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.240 
  • R-Value Work: 0.173 
  • Space Group: C 1 2 1
Unit Cell:
Length (Å)Angle (°)
a = 125.833α = 90.00
b = 61.186β = 116.30
c = 128.871γ = 90.00
Software Package:
Software NamePurpose
PHASERphasing
Cootmodel building
HKL-2000data reduction
PDB_EXTRACTdata extraction
SCALEPACKdata scaling
REFMACrefinement

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical SciencesUnited StatesR01 GM49857
National Institutes of Health/National Cancer InstituteUnited StatesRL1 CA133833

Revision History 

  • Version 1.0: 2015-04-22
    Type: Initial release
  • Version 1.1: 2017-09-20
    Type: Author supporting evidence, Derived calculations, Source and taxonomy