4YW4

Streptococcus pneumoniae sialidase NanC


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.182 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

Crystal structure of a novel sialidase

Owen, C.D.Lukacik, P.Potter, J.A.Walsh, M.Taylor, G.L.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
Neuraminidase C
A, B
659Streptococcus pneumoniaeMutation(s): 0 
Gene Names: nanC
EC: 3.2.1.18
Find proteins for A0A182DW00 (Streptococcus pneumoniae)
Go to UniProtKB:  A0A182DW00
Small Molecules
Ligands 2 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PO4
Query on PO4

Download SDF File 
Download CCD File 
A, B
PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
 Ligand Interaction
GOL
Query on GOL

Download SDF File 
Download CCD File 
A, B
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.214 
  • R-Value Work: 0.182 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 99.697α = 90.00
b = 74.770β = 95.71
c = 113.110γ = 90.00
Software Package:
Software NamePurpose
xia2data reduction
SCALAdata scaling
REFMACrefinement
PHASERphasing
MOSFLMdata reduction
PDB_EXTRACTdata extraction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/F016778/1

Revision History 

  • Version 1.0: 2016-04-13
    Type: Initial release
  • Version 2.0: 2017-08-30
    Type: Atomic model, Author supporting evidence, Data collection