4YR6

Fab fragment of 5G6 in complex with epitope peptide

  • Classification: IMMUNE SYSTEM
  • Organism(s): Homo sapiens

  • Deposited: 2015-03-14 Released: 2016-03-09 
  • Deposition Author(s): Tao, Y., Mo, X., Li, R.
  • Funding Organization(s): China Natural Science Fund; Shanghai Xinyouqing Program 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.211 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history. 

Literature

Specific inhibition of GPIBA shedding improves post-transfusion recovery and preserves adhesive function during prolonged storage of human apheresis platelets

Liang, X., Tao, Y., Syed, A.K., Jessup, P., Church, W., Mo, X., Josephson, C.D., Li, R.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
heavy chain of 5G6
A, D
221N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
light chain of 5G6
B, E
214N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ACE-LYS-LEU-ARG-GLY-VAL-LEU-GLN-GLY-HIS-LEU
C, F
11Homo sapiensMutation(s): 0 
Gene Names: GP1BA
Find proteins for P07359 (Homo sapiens)
Go to Gene View: GP1BA
Go to UniProtKB:  P07359
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL
Download SDF File 
Download CCD File 
B, E
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
ACE
Query on ACE
C, F
NON-POLYMERC2 H4 O

--

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.211 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 101.900α = 90.00
b = 147.060β = 90.00
c = 194.950γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PHENIXmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots


View more in-depth experimental data

Entry History & Funding Information

Deposition Data

  • Deposited Date: 2015-03-14 
  • Released Date: 2016-03-09 
  • Deposition Author(s): Tao, Y., Mo, X., Li, R.
Funding OrganizationLocationGrant Number
China Natural Science FundChina81100346
Shanghai Xinyouqing ProgramChinaXYQ2013069

Revision History 

  • Version 1.0: 2016-03-09
    Type: Initial release
  • Version 1.1: 2017-04-05
    Type: Source and taxonomy