4YR6

Fab fragment of 5G6 in complex with epitope peptide

  • Classification: IMMUNE SYSTEM
  • Organism(s): Homo sapiens

  • Deposited: 2015-03-14 Released: 2016-03-09 
  • Deposition Author(s): Tao, Y., Mo, X., Li, R.
  • Funding Organization(s): China Natural Science Fund; Shanghai Xinyouqing Program 

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.211 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

Specific inhibition of GPIBA shedding improves post-transfusion recovery and preserves adhesive function during prolonged storage of human apheresis platelets

Liang, X.Tao, Y.Syed, A.K.Jessup, P.Church, W.Mo, X.Josephson, C.D.Li, R.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
heavy chain of 5G6
A, D
221N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 2
MoleculeChainsSequence LengthOrganismDetails
light chain of 5G6
B, E
214N/AMutation(s): 0 
Protein Feature View is not available: No corresponding UniProt sequence found.
Entity ID: 3
MoleculeChainsSequence LengthOrganismDetails
ACE-LYS-LEU-ARG-GLY-VAL-LEU-GLN-GLY-HIS-LEU
C, F
11Homo sapiensMutation(s): 0 
Gene Names: GP1BA
Find proteins for P07359 (Homo sapiens)
Go to Gene View: GP1BA
Go to UniProtKB:  P07359
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
B, E
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
ACE
Query on ACE
C, F
NON-POLYMERC2 H4 O

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Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 0.251 
  • R-Value Work: 0.211 
  • Space Group: C 2 2 21
Unit Cell:
Length (Å)Angle (°)
a = 101.900α = 90.00
b = 147.060β = 90.00
c = 194.950γ = 90.00
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PHENIXmodel building

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data

  • Deposited Date: 2015-03-14 
  • Released Date: 2016-03-09 
  • Deposition Author(s): Tao, Y., Mo, X., Li, R.

Funding OrganizationLocationGrant Number
China Natural Science FundChina81100346
Shanghai Xinyouqing ProgramChinaXYQ2013069

Revision History 

  • Version 1.0: 2016-03-09
    Type: Initial release
  • Version 1.1: 2017-04-05
    Type: Source and taxonomy