4YMY

Crystal structure of mutant nitrobindin M75A/H76L/Q96C/M148L/H158A (NB11) from Arabidopsis thaliana


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1 Å
  • R-Value Free: 0.136 
  • R-Value Work: 0.123 

wwPDB Validation 3D Report Full Report


This is version 1.0 of the entry. See complete history

Literature

A Highly Active Biohybrid Catalyst for Olefin Metathesis in Water: Impact of a Hydrophobic Cavity in a beta-Barrel Protein

Sauer, D.F.Himiyama, T.Tachikawa, K.Fukumoto, K.Onoda, A.Mizohata, E.Inoue, T.Bocola, M.Schwaneberg, U.Hayashi, T.Okuda, J.

(2015) Acs Catalysis 5: 7519-7522


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
UPF0678 fatty acid-binding protein-like protein At1g79260
A
174Arabidopsis thalianaMutation(s): 5 
Find proteins for O64527 (Arabidopsis thaliana)
Go to UniProtKB:  O64527
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download SDF File 
Download CCD File 
A
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1 Å
  • R-Value Free: 0.136 
  • R-Value Work: 0.123 
  • Space Group: P 21 21 2
Unit Cell:
Length (Å)Angle (°)
a = 59.654α = 90.00
b = 79.285β = 90.00
c = 36.409γ = 90.00
Software Package:
Software NamePurpose
HKL-2000data processing
REFMACrefinement
PHASERphasing
Cootmodel building
HKL-2000data reduction

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
MEXTJapanarea 2204

Revision History 

  • Version 1.0: 2015-12-30
    Type: Initial release