4YMC

Lambda-[Ru(TAP)2(dppz)]2+ bound to d(CCGGATCCGG)2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.198 

wwPDB Validation 3D Report Full Report


This is version 2.0 of the entry. See complete history

Literature

Reversal of a single base pair step controls guanine photo-oxidation by an intercalating Ru(II) dipyridophenazine complex.

Keane, P.M.Gurung, S.P.Niyazi, H.Poynton, F.E.Hall, J.P.Sazanovich, I.V.Towrie, M.Teixeira, S.Mitchell, E.Forsyth, T.Gunnlaugsson, T.Quinn, S.J.Cardin, C.J.Kelly, J.M.

To be published.

Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsLengthOrganism
DNA (5'-D(*CP*CP*GP*GP*AP*TP*CP*CP*GP*G)-3')A10synthetic construct
Small Molecules
Ligands 3 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
CL
Query on CL

Download SDF File 
Download CCD File 
A
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
 Ligand Interaction
BA
Query on BA

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Download CCD File 
A
BARIUM ION
Ba
XDFCIPNJCBUZJN-UHFFFAOYSA-N
 Ligand Interaction
RKL
Query on RKL

Download SDF File 
Download CCD File 
A
Ru(tap)2(dppz) complex
C38 H22 N12 Ru
PIKVAZQLFXBUSD-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.257 
  • R-Value Work: 0.198 
  • Space Group: P 43 21 2
Unit Cell:
Length (Å)Angle (°)
a = 47.380α = 90.00
b = 47.380β = 90.00
c = 33.830γ = 90.00
Software Package:
Software NamePurpose
SHELXphasing
REFMACrefinement
xia2data reduction
Cootmodel building
xia2data scaling

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Biotechnology and Biological Sciences Research CouncilUnited KingdomBB/K019279/1

Revision History 

  • Version 1.0: 2016-03-23
    Type: Initial release
  • Version 2.0: 2017-08-30
    Type: Atomic model, Author supporting evidence, Derived calculations